publications

2026

1. EMNLP

   

   FaithMed: Training LLMs for Faithful Evidence-Based Medical Reasoning

   Zhiyun Zhang, Liwen Sun, Xiang Qian, and 1 more author

   In Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing (EMNLP), 2026

   Bib PDF Code

   @inproceedings{zhang2026faithmed,
     title = {{FaithMed}: Training {LLMs} for Faithful Evidence-Based Medical Reasoning},
     author = {Zhang, Zhiyun and Sun, Liwen and Qian, Xiang and Xiong, Chenyan},
     booktitle = {Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing ({EMNLP})},
     year = {2026},
   }

2. AAAI

   

   Disentangling for Transfer: Boosting Limited Modalities via Information-Theoretic Regularization and Cross-Modal Reconstruction

   Zhiyun Zhang, Yanjun Zhou, Yu Hu, and 5 more authors

   In Proceedings of the AAAI Conference on Artificial Intelligence, 2026

   Bib PDF

   @inproceedings{zhang2026disentangling,
     title = {Disentangling for Transfer: Boosting Limited Modalities via Information-Theoretic Regularization and Cross-Modal Reconstruction},
     author = {Zhang, Zhiyun and Zhou, Yanjun and Hu, Yu and Ma, Xin and Yuan, Zheng and Wang, Zheng and Zhang, Hao and Xu, Min},
     booktitle = {Proceedings of the AAAI Conference on Artificial Intelligence},
     volume = {40},
     number = {15},
     year = {2026},
   }

3. bioRxiv

   Ophiuchus-Ab: A Versatile Generative Foundation Model for Advanced Antibody-Based Immunotherapy

   Y. Zhu, J. Ma, M. Yin, and 8 more authors

   bioRxiv, 2026

   Bib

   @article{zhu2026ophiuchus,
     title = {Ophiuchus-Ab: A Versatile Generative Foundation Model for Advanced Antibody-Based Immunotherapy},
     author = {Zhu, Y. and Ma, J. and Yin, M. and Wu, J. and Tang, L. and Zhang, Zhiyun and Li, Q. and Feng, S. and Liu, H. and Qin, T. and others},
     journal = {bioRxiv},
     year = {2026}
   }

2025

1. arXiv

   

   GENERator: A Long-Context Generative Genomic Foundation Model

   W. Wu, Q. Li, Y. Zhang, and 9 more authors

   arXiv preprint arXiv:2502.07272, 2025

   Bib PDF

   @article{wu2025generator,
     title = {{GENERator}: A Long-Context Generative Genomic Foundation Model},
     author = {Wu, W. and Li, Q. and Zhang, Y. and Zhan, Z. and Chen, R. and Li, M. and Fu, K. and Qi, J. and Bao, Y. and Wang, C. and Zhang, Zhiyun and others},
     journal = {arXiv preprint arXiv:2502.07272},
     year = {2025},
   }

2. Aging

   Causal Association of Sarcopenia-Related Traits with Brain Cortical Structure: A Bidirectional Mendelian Randomization Study

   Y. Zhan, Zhiyun Zhang, S. Lin, and 4 more authors

   Aging Clinical and Experimental Research, 2025

   Bib

   @article{zhan2025sarcopenia,
     title = {Causal Association of Sarcopenia-Related Traits with Brain Cortical Structure: A Bidirectional Mendelian Randomization Study},
     author = {Zhan, Y. and Zhang, Zhiyun and Lin, S. and Du, B. and Zhang, K. and Wu, J. and Xu, H.},
     journal = {Aging Clinical and Experimental Research},
     volume = {37},
     number = {1},
     year = {2025}
   }

3. MedComm

   Efficacy, Safety, and Biomarkers of Neoadjuvant Dalpiciclib (CDK4/6 inhibitor) plus Aromatase Inhibitors in Operable HER2-Negative Luminal B Breast Cancer

   Y. Zhou, Zhiyun Zhang, H. Chen, and 6 more authors

   MedComm, 2025

   Bib

   @article{zhou2025dalpiciclib,
     title = {Efficacy, Safety, and Biomarkers of Neoadjuvant Dalpiciclib ({CDK4/6} inhibitor) plus Aromatase Inhibitors in Operable {HER2}-Negative Luminal B Breast Cancer},
     author = {Zhou, Y. and Zhang, Zhiyun and Chen, H. and Huang, F. and Shen, L. and Tao, S. and Qian, W. and Hong, H. and others},
     journal = {MedComm},
     volume = {6},
     number = {10},
     year = {2025}
   }

4. Front. Pharmacol.

   Clinical Significance of Lipid Pathway-Targeted Therapy in Breast Cancer

   D. Li, P. Jin, Y. Cai, and 7 more authors

   Frontiers in Pharmacology, 2025

   Bib

   @article{li2025lipid,
     title = {Clinical Significance of Lipid Pathway-Targeted Therapy in Breast Cancer},
     author = {Li, D. and Jin, P. and Cai, Y. and Wu, S. and Guo, X. and Zhang, Zhiyun and Liu, K. and Li, P. and Hu, Y. and Zhou, Y.},
     journal = {Frontiers in Pharmacology},
     volume = {15},
     year = {2025}
   }

2024

1. NEJM AI

   Clinical Text Datasets for Medical Artificial Intelligence and Large Language Models—A Systematic Review

   J. Wu, X. Liu, M. Li, and 8 more authors

   NEJM AI, 2024

   Bib

   @article{wu2024clinical,
     title = {Clinical Text Datasets for Medical Artificial Intelligence and Large Language Models---A Systematic Review},
     author = {Wu, J. and Liu, X. and Li, M. and Li, W. and Su, Z. and Lin, S. and Garay, L. and Zhang, Zhiyun and Zhang, Y. and Zeng, Q. and others},
     journal = {NEJM AI},
     volume = {1},
     number = {6},
     year = {2024}
   }

2. Health Data Sci.

   Sexual and Gender-Diverse Individuals Face More Health Challenges during COVID-19: A Large-Scale Social Media Analysis with Natural Language Processing

   Zhiyun Zhang, Y. Hua, P. Zhou, and 6 more authors

   Health Data Science, 2024

   Bib

   @article{zhang2024covid,
     title = {Sexual and Gender-Diverse Individuals Face More Health Challenges during {COVID-19}: A Large-Scale Social Media Analysis with Natural Language Processing},
     author = {Zhang, Zhiyun and Hua, Y. and Zhou, P. and Lin, S. and Li, M. and Zhang, Y. and Zhou, L. and Liao, Y. and Yang, J.},
     journal = {Health Data Science},
     volume = {4},
     year = {2024}
   }